Basic Information

Dataset PRJNA30709
Species Homo sapiens
Source NCBI SRA
Subcellular Localization Cytosol|Nucleus|Chromatin|Nucleolus|Nucleoplasm
PMID 22955616
Citation ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 2012 Sep 6;489(7414):57-74.

Sample Information

GEO Accession Sample Name Localization Sex Source Label
GSE78411 GSM2071456 cytosol female SK-MEL-5 small RNA-seq from SK-MEL-5 (ENCLB263FZA)
GSE78411 GSM2071457 cytosol female SK-MEL-5 small RNA-seq from SK-MEL-5 (ENCLB642ALL)
GSE78418 GSM2071468 cytosol female SK-N-DZ small RNA-seq from SK-N-DZ (ENCLB636BID)
GSE78418 GSM2071469 cytosol female SK-N-DZ small RNA-seq from SK-N-DZ (ENCLB661KZL)
GSE78492 GSM2071647 cytosol male NCI-H460 small RNA-seq from NCI-H460 (ENCLB389QYK)
GSE78492 GSM2071648 cytosol male NCI-H460 small RNA-seq from NCI-H460 (ENCLB139JRP)
GSE78629 GSM2072503 cytosol male HT1080 polyA mRNA RNA-seq from HT1080 (ENCLB469VQX)
GSE78629 GSM2072504 cytosol male HT1080 polyA mRNA RNA-seq from HT1080 (ENCLB308HCW)
GSE78639 GSM2072523 cytosol female SK-MEL-5 polyA mRNA RNA-seq from SK-MEL-5 (ENCLB699FRX)
GSE78639 GSM2072524 cytosol female SK-MEL-5 polyA mRNA RNA-seq from SK-MEL-5 (ENCLB418RTH)
GSE78656 GSM2072557 cytosol female SK-N-DZ polyA mRNA RNA-seq from SK-N-DZ (ENCLB071UME)
GSE78656 GSM2072558 cytosol female SK-N-DZ polyA mRNA RNA-seq from SK-N-DZ (ENCLB519UOV)
GSE88238 GSM2343644 cytosol female K562 polyA mRNA RNA-seq from K562 (ENCLB758HRD)
GSE88238 GSM2343645 cytosol female K562 polyA mRNA RNA-seq from K562 (ENCLB014EDA)
GSE88602 GSM2344262 cytosol female K562 total RNA-seq from K562 (ENCLB291DQQ)
GSE88602 GSM2344263 cytosol female K562 total RNA-seq from K562 (ENCLB756NMR)
GSE88604 GSM2344266 cytosol male HepG2 total RNA-seq from HepG2 (ENCLB805ZYQ)
GSE88604 GSM2344267 cytosol male HepG2 total RNA-seq from HepG2 (ENCLB866JXA)
GSE88654 GSM2344353 cytosol male HepG2 polyA mRNA RNA-seq from HepG2 (ENCLB716GPJ)
GSE88654 GSM2344354 cytosol male HepG2 polyA mRNA RNA-seq from HepG2 (ENCLB644EBX)
GSE90220 GSM2400142 cytosol female K562 polyA mRNA RNA-seq from K562 (ENCLB555AQT)
GSE90220 GSM2400143 cytosol female K562 polyA mRNA RNA-seq from K562 (ENCLB555AQU)
GSE90228 GSM2400156 nucleus male HepG2 polyA mRNA RNA-seq from HepG2 (ENCLB555AWM)
GSE90228 GSM2400157 nucleus male HepG2 polyA mRNA RNA-seq from HepG2 (ENCLB555AWN)
GSE90230 GSM2400160 cytosol male HepG2 polyA mRNA RNA-seq from HepG2 (ENCLB555AOO)
GSE90230 GSM2400161 cytosol male HepG2 polyA mRNA RNA-seq from HepG2 (ENCLB555AOP)
GSE90234 GSM2400168 cytosol female HeLa-S3 polyA mRNA RNA-seq from HeLa-S3 (ENCLB555ALJ)
GSE90234 GSM2400169 cytosol female HeLa-S3 polyA mRNA RNA-seq from HeLa-S3 (ENCLB555ALK)
GSE90235 GSM2400170 nucleus female HeLa-S3 polyA mRNA RNA-seq from HeLa-S3 (ENCLB555ASN)
GSE90235 GSM2400171 nucleus female HeLa-S3 polyA mRNA RNA-seq from HeLa-S3 (ENCLB555ASM)
GSE90236 GSM2400172 nucleus female K562 polyA mRNA RNA-seq from K562 (ENCLB555ALY)
GSE90236 GSM2400173 nucleus female K562 polyA mRNA RNA-seq from K562 (ENCLB555ALX)
GSE90238 GSM2400176 chromatin female K562 total RNA-seq from K562 (ENCLB555APY)
GSE90238 GSM2400177 chromatin female K562 total RNA-seq from K562 (ENCLB555ARJ)
GSE90239 GSM2400178 nucleolus female K562 total RNA-seq from K562 (ENCLB555ANR)
GSE90239 GSM2400179 nucleolus female K562 total RNA-seq from K562 (ENCLB555ANQ)
GSE90240 GSM2400180 nucleoplasm female K562 total RNA-seq from K562 (ENCLB555AMM)
GSE90240 GSM2400181 nucleoplasm female K562 total RNA-seq from K562 (ENCLB555AML)
GSE90246 GSM2400192 nucleus female HeLa-S3 polyA depleted RNA-seq from HeLa-S3 (ENCLB555ASQ)
GSE90246 GSM2400193 nucleus female HeLa-S3 polyA depleted RNA-seq from HeLa-S3 (ENCLB555ASP)
GSE90248 GSM2400196 nucleus male HepG2 polyA depleted RNA-seq from HepG2 (ENCLB555APN)
GSE90248 GSM2400197 nucleus male HepG2 polyA depleted RNA-seq from HepG2 (ENCLB555APO)
GSE90249 GSM2400198 cytosol female K562 polyA depleted RNA-seq from K562 (ENCLB555AOF)
GSE90249 GSM2400199 cytosol female K562 polyA depleted RNA-seq from K562 (ENCLB555AOE)
GSE90250 GSM2400200 nucleus female K562 polyA depleted RNA-seq from K562 (ENCLB555ASL)
GSE90250 GSM2400201 nucleus female K562 polyA depleted RNA-seq from K562 (ENCLB555ASK)
GSE90256 GSM2400208 cytosol male HepG2 polyA depleted RNA-seq from HepG2 (ENCLB555AWJ)
GSE90256 GSM2400209 cytosol male HepG2 polyA depleted RNA-seq from HepG2 (ENCLB555APZ)
GSE90258 GSM2400212 cytosol male A549 polyA mRNA RNA-seq from A549 (ENCLB555AWO)
GSE90258 GSM2400213 cytosol male A549 polyA mRNA RNA-seq from A549 (ENCLB555AWP)
GSE90259 GSM2400214 nucleus male A549 polyA mRNA RNA-seq from A549 (ENCLB555ASA)
GSE90259 GSM2400215 nucleus male A549 polyA mRNA RNA-seq from A549 (ENCLB555ASB)
GSE90261 GSM2400218 nucleus female MCF-7 polyA mRNA RNA-seq from MCF-7 (ENCLB555AVR)
GSE90261 GSM2400219 nucleus female MCF-7 polyA mRNA RNA-seq from MCF-7 (ENCLB555AVS)
GSE90264 GSM2400224 cytosol female SK-N-SH polyA mRNA RNA-seq from SK-N-SH (ENCLB555AKY)
GSE90264 GSM2400225 cytosol female SK-N-SH polyA mRNA RNA-seq from SK-N-SH (ENCLB555AKZ)
GSE90265 GSM2400226 nucleus female SK-N-SH polyA mRNA RNA-seq from SK-N-SH (ENCLB555AMH)
GSE90265 GSM2400227 nucleus female SK-N-SH polyA mRNA RNA-seq from SK-N-SH (ENCLB555AMI)
GSE90267 GSM2400230 cytosol female MCF-7 polyA mRNA RNA-seq from MCF-7 (ENCLB555APP)
GSE90267 GSM2400231 cytosol female MCF-7 polyA mRNA RNA-seq from MCF-7 (ENCLB555AQA)
GSE94234 GSM2471354 cytosol female K562 polyA mRNA RNA-seq from K562 (ENCLB555AJR)
GSE94234 GSM2471355 cytosol female K562 polyA mRNA RNA-seq from K562 (ENCLB555AJH)

Subcellular Localization Number

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Localization Differential Analysis

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Specific Subcellular Localization

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Dynamic RNA Localization

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Specific Enrichment Analysis

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Specific RNA Ratio

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