Basic Information

Dataset GSE73391
Status 2016-05-03
Species Mus musculus
Source NCBI GEO
Subcellular Localization nuclear
PMID 27113499
Title Nuclear RNA in the nervous system
Citation Reddy AS, O'Brien D, Pisat N, Weichselbaum CT et al. A Comprehensive Analysis of Cell Type-Specific Nuclear RNA From Neurons and Glia of the Brain. Biol Psychiatry 2017 Feb 1;81(3):252-264.
Experimental Design Three to four independent replicate samples (each from one mouse) were collected for each of three sample types: Neuronal nuclear RNA, Astrocyte nuclear RNA, Oligodendrocyte nuclear RNA. Controls include low-coverage presorted nuclear RNA from each mouse.

Sample Information

BioProject Sample Name Localization Sex Cell Type Source Label
PRJNA296870 GSM1892439 nuclear RNA female Mixed whole Brain 920_Presort_F_Astro_29
PRJNA296870 GSM1892440 nuclear RNA female Mixed whole Brain 920_Presort_F_Astro_31
PRJNA296870 GSM1892441 nuclear RNA female Mixed whole Brain 920_Presort_F_Neuro_25
PRJNA296870 GSM1892442 nuclear RNA female Mixed whole Brain 920_Presort_F_Neuro_27
PRJNA296870 GSM1892443 nuclear RNA female Mixed whole Brain 920_Presort_F_Oligo_33
PRJNA296870 GSM1892444 nuclear RNA female Mixed whole Brain 920_Presort_F_Oligo_35
PRJNA296870 GSM1892445 nuclear RNA male Mixed whole Brain 920_Presort_M_Astro_5
PRJNA296870 GSM1892446 nuclear RNA male Mixed whole Brain 920_Presort_M_Astro_7
PRJNA296870 GSM1892447 nuclear RNA male Mixed whole Brain 920_Presort_M_Neuro_1
PRJNA296870 GSM1892448 nuclear RNA male Mixed whole Brain 920_Presort_M_Neuro_3
PRJNA296870 GSM1892449 nuclear RNA male Mixed whole Brain 920_Presort_M_Oligo_11
PRJNA296870 GSM1892450 nuclear RNA male Mixed whole Brain 920_Presort_M_Oligo_9
PRJNA296870 GSM1892451 nuclear RNA female Astrocyte whole Brain 920_Sorted_F_Astro_30
PRJNA296870 GSM1892452 nuclear RNA female Astrocyte whole Brain 920_Sorted_F_Astro_32
PRJNA296870 GSM1892453 nuclear RNA female Neuron whole Brain 920_Sorted_F_Neuro_26
PRJNA296870 GSM1892454 nuclear RNA female Neuron whole Brain 920_Sorted_F_Neuro_28
PRJNA296870 GSM1892455 nuclear RNA female Oligodendrocyte whole Brain 920_Sorted_F_Oligo_34
PRJNA296870 GSM1892456 nuclear RNA female Oligodendrocyte whole Brain 920_Sorted_F_Oligo_36
PRJNA296870 GSM1892457 nuclear RNA male Astrocyte whole Brain 920_Sorted_M_Astro_6
PRJNA296870 GSM1892458 nuclear RNA male Astrocyte whole Brain 920_Sorted_M_Astro_8
PRJNA296870 GSM1892459 nuclear RNA male Neuron whole Brain 920_Sorted_M_Neuro_2
PRJNA296870 GSM1892460 nuclear RNA male Neuron whole Brain 920_Sorted_M_Neuro_4
PRJNA296870 GSM1892461 nuclear RNA male Oligodendrocyte whole Brain 920_Sorted_M_Oligo_10
PRJNA296870 GSM1892462 nuclear RNA male Oligodendrocyte whole Brain 920_Sorted_M_Oligo_12

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Localization Differential Analysis

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Specific Subcellular Localization

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Dynamic RNA Localization

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Specific Enrichment Analysis

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Specific RNA Ratio

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