Basic Information

Dataset GSE215768
Status 2022-11-15
Species Homo sapiens
Source NCBI GEO
Subcellular Localization Cytosol|ER|TISgranule
Title Cytoplasmic Location of Translation Controls Protein Output [RNA-seq]
Citation https://www.biorxiv.org/content/10.1101/2022.11.04.515216v1.full.pdf
Experimental Design To identify compartment-specific cellular functions, we used fluorescent particle sorting to isolate TIS granules, the ER surface, and the cytosol and determined their mRNA contents.

Sample Information

BioProject Sample Name Localization Treatment Source Label
PRJNA890585 GSM6638342 cytosol None HEK293T Cytosol_untransfected_rep1
PRJNA890585 GSM6638343 cytosol None HEK293T Cytosol_untransfected_rep2
PRJNA890585 GSM6638344 ER CaPO4 transfection with GFP-SEC61B HEK293T ER_transfected_SEC61B_rep1
PRJNA890585 GSM6638345 ER CaPO4 transfection with GFP-SEC61B HEK293T ER_transfected_SEC61B_rep2
PRJNA890585 GSM6638346 TISgranule CaPO4 transfection with mCherry-TIS11B HEK293T TISgranule_transfected_TIS11B_rep1
PRJNA890585 GSM6638347 TISgranule CaPO4 transfection with mCherry-TIS11B HEK293T TISgranule_transfected_TIS11B_rep2
PRJNA890585 GSM6638348 TISgranule CaPO4 transfection with mCherry-TIS11B HEK293T TISgranule_transfected_TIS11B_rep3

Subcellular Localization Number

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Localization Differential Analysis

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Specific Subcellular Localization

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Dynamic RNA Localization

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Specific Enrichment Analysis

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Specific RNA Ratio

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