Basic Information
| Dataset | GSE190311 |
|---|---|
| Status | 2022-08-30 |
| Species | Mus musculus |
| Source | NCBI GEO |
| Subcellular Localization | chromatin associated (CA)|nuclear|cytoplasm |
| PMID | 36044854 |
| Title | RBM45 is an m6A-binding protein that affects neuronal differentiation and the splicing of a subset of pre-mRNAs IV |
| Citation | Choi SH, Flamand MN, Liu B, Zhu H et al. RBM45 is an m(6)A-binding protein that affects neuronal differentiation and the splicing of a subset of mRNAs. Cell Rep 2022 Aug 30;40(9):111293. |
| Experimental Design | in vitro DART-seq m⁶A profiling on subcellular fractionated RNAs (chromatin associated (CA), nuclear, and cytoplasmic RNA) from immortalized mouse hippocampal neurons (mHiPPoE-2) |
Sample Information
| BioProject | Sample Name | Localization | Treatment | Source | Label |
|---|---|---|---|---|---|
| PRJNA786624 | GSM5719632 | chromatin-associated (CA) | APOBEC1-YTH treated RNA | mHiPPoE-2 | DART_mHiPPoE2-CA-DART_rep1 |
| PRJNA786624 | GSM5719633 | chromatin-associated (CA) | APOBEC1-YTH treated RNA | mHiPPoE-2 | DART_mHiPPoE2-CA-DART_rep2 |
| PRJNA786624 | GSM5719634 | chromatin-associated (CA) | APOBEC1-YTHmut treated RNA | mHiPPoE-2 | DART_mHiPPoE2-CA-mut_rep1 |
| PRJNA786624 | GSM5719635 | chromatin-associated (CA) | APOBEC1-YTHmut treated RNA | mHiPPoE-2 | DART_mHiPPoE2-CA-mut_rep2 |
| PRJNA786624 | GSM5719636 | nuclear (Nuc) | APOBEC1-YTH treated RNA | mHiPPoE-2 | DART_mHiPPoE2-nuc-DART_rep1 |
| PRJNA786624 | GSM5719637 | nuclear (Nuc) | APOBEC1-YTH treated RNA | mHiPPoE-2 | DART_mHiPPoE2-nuc-DART_rep2 |
| PRJNA786624 | GSM5719638 | nuclear (Nuc) | APOBEC1-YTHmut treated RNA | mHiPPoE-2 | DART_mHiPPoE2-nuc-mut_rep1 |
| PRJNA786624 | GSM5719639 | nuclear (Nuc) | APOBEC1-YTHmut treated RNA | mHiPPoE-2 | DART_mHiPPoE2-nuc-mut_rep2 |
| PRJNA786624 | GSM5719640 | cytoplasmic (Cyto) | APOBEC1-YTH treated RNA | mHiPPoE-2 | DART_mHiPPoE2-cyto-DART_rep1 |
| PRJNA786624 | GSM5719641 | cytoplasmic (Cyto) | APOBEC1-YTH treated RNA | mHiPPoE-2 | DART_mHiPPoE2-cyto-DART_rep2 |
| PRJNA786624 | GSM5719642 | cytoplasmic (Cyto) | APOBEC1-YTHmut treated RNA | mHiPPoE-2 | DART_mHiPPoE2-cyto-mut_rep1 |
| PRJNA786624 | GSM5719643 | cytoplasmic (Cyto) | APOBEC1-YTHmut treated RNA | mHiPPoE-2 | DART_mHiPPoE2-cyto-mut_rep2 |
Subcellular Localization Number
RNA Type:
Condition:
Localization Differential Analysis
RNA Type:
Localization:
Condition:
Method:
Enrichment:
Specific Subcellular Localization
RNA Type:
Method:
Dynamic RNA Localization
RNA Type:
Method:
Specific Enrichment Analysis
RNA Type:
Localization:
Condition:
Method:
Enrichment:
Specific RNA Ratio
RNA Type:
RNA Symbol:
TPM:
