Basic Information
| Dataset | GSE164126 |
|---|---|
| Status | 2023-12-31 |
| Species | Mus musculus |
| Source | NCBI GEO |
| Subcellular Localization | chromatin-enriched|soluble-nuclear |
| Title | Chromatin-enriched RNA sequencing of HL-1 mouse cardiomyocytes |
| Experimental Design | Three biological replicates of HL-1 cell nuclei were subjected to biochemical fractionation. ERCC spike-in RNA standards were added to each fraction prior to RNA extraction. RNA from three chromatin pellet and three soluble nuclear fractions were converted to cDNA using NEBNext Ultra II Directional RNA library peparation and sequenced on the Illumina HiSeq4000. |
Sample Information
| BioProject | Sample Name | Localization | Source | Label |
|---|---|---|---|---|
| PRJNA688929 | GSM4997089 | chromatin-enriched RNA | HL-1 cardiomyocyte cell line | HL-1 Chromatin Pellet Extract rep1 |
| PRJNA688929 | GSM4997090 | chromatin-enriched RNA | HL-1 cardiomyocyte cell line | HL-1 Chromatin Pellet Extract rep2 |
| PRJNA688929 | GSM4997091 | chromatin-enriched RNA | HL-1 cardiomyocyte cell line | HL-1 Chromatin Pellet Extract rep3 |
| PRJNA688929 | GSM4997092 | soluble-nuclear RNA | HL-1 cardiomyocyte cell line | HL-1 Soluble Nuclear Extract rep1 |
| PRJNA688929 | GSM4997093 | soluble-nuclear RNA | HL-1 cardiomyocyte cell line | HL-1 Soluble Nuclear Extract rep2 |
| PRJNA688929 | GSM4997094 | soluble-nuclear RNA | HL-1 cardiomyocyte cell line | HL-1 Soluble Nuclear Extract rep3 |
Subcellular Localization Number
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Localization Differential Analysis
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Specific Subcellular Localization
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Dynamic RNA Localization
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Specific Enrichment Analysis
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