Basic Information

Dataset E-MTAB-12888
Status 2023-07-12
Species Mus musculus
Source EBI ArrayExpress
Subcellular Localization nucleus|soma-cytoplasm|neurite
Title SlamSeq of subcellular compartments in mouse primary cortical neurons
Experimental Design We performed SlamSeq (thiol(SH)-linked alkylation for metabolic sequencing) to estimate mRNA half-lives in subcellular compartments (neurites, soma-cytoplasm and nucleus) of primary cortical neurons.

Sample Information

BioProject Sample Name Localization Time Source Label
PRJEB61798 ERS15394764 soma-cytoplasm 0 hour neuron of crebral cortex Cyto_0_Rep1
PRJEB61798 ERS15394765 soma-cytoplasm 0 hour neuron of crebral cortex Cyto_0_Rep2
PRJEB61798 ERS15394766 soma-cytoplasm 0 hour neuron of crebral cortex Cyto_0_Rep3
PRJEB61798 ERS15394767 soma-cytoplasm 16 hour neuron of crebral cortex Cyto_16_Rep1
PRJEB61798 ERS15394768 soma-cytoplasm 16 hour neuron of crebral cortex Cyto_16_Rep2
PRJEB61798 ERS15394769 soma-cytoplasm 16 hour neuron of crebral cortex Cyto_16_Rep3
PRJEB61798 ERS15394770 soma-cytoplasm 4 hour neuron of crebral cortex Cyto_4_Rep1
PRJEB61798 ERS15394771 soma-cytoplasm 4 hour neuron of crebral cortex Cyto_4_Rep2
PRJEB61798 ERS15394772 soma-cytoplasm 4 hour neuron of crebral cortex Cyto_4_Rep3
PRJEB61798 ERS15394773 soma-cytoplasm 8 hour neuron of crebral cortex Cyto_8_Rep1
PRJEB61798 ERS15394774 soma-cytoplasm 8 hour neuron of crebral cortex Cyto_8_Rep2
PRJEB61798 ERS15394775 soma-cytoplasm 8 hour neuron of crebral cortex Cyto_8_Rep8
PRJEB61798 ERS15394776 nucleus 0 hour neuron of crebral cortex Nuc_0_Rep1
PRJEB61798 ERS15394777 nucleus 0 hour neuron of crebral cortex Nuc_0_Rep2
PRJEB61798 ERS15394778 nucleus 0 hour neuron of crebral cortex Nuc_0_Rep3
PRJEB61798 ERS15394779 nucleus 16 hour neuron of crebral cortex Nuc_16_Rep1
PRJEB61798 ERS15394780 nucleus 16 hour neuron of crebral cortex Nuc_16_Rep2
PRJEB61798 ERS15394781 nucleus 16 hour neuron of crebral cortex Nuc_16_Rep3
PRJEB61798 ERS15394782 nucleus 4 hour neuron of crebral cortex Nuc_4_Rep1
PRJEB61798 ERS15394783 nucleus 4 hour neuron of crebral cortex Nuc_4_Rep2
PRJEB61798 ERS15394784 nucleus 4 hour neuron of crebral cortex Nuc_4_Rep3
PRJEB61798 ERS15394785 nucleus 8 hour neuron of crebral cortex Nuc_8_Rep1
PRJEB61798 ERS15394786 nucleus 8 hour neuron of crebral cortex Nuc_8_Rep2
PRJEB61798 ERS15394787 nucleus 8 hour neuron of crebral cortex Nuc_8_Rep3
PRJEB61798 ERS15394788 neurite 0 hour neuron of crebral cortex Pro_0_Rep1
PRJEB61798 ERS15394789 neurite 0 hour neuron of crebral cortex Pro_0_Rep2
PRJEB61798 ERS15394790 neurite 0 hour neuron of crebral cortex Pro_0_Rep3
PRJEB61798 ERS15394791 neurite 16 hour neuron of crebral cortex Pro_16_Rep1
PRJEB61798 ERS15394792 neurite 16 hour neuron of crebral cortex Pro_16_Rep2
PRJEB61798 ERS15394793 neurite 16 hour neuron of crebral cortex Pro_16_Rep3
PRJEB61798 ERS15394794 neurite 4 hour neuron of crebral cortex Pro_4_Rep1
PRJEB61798 ERS15394795 neurite 4 hour neuron of crebral cortex Pro_4_Rep2
PRJEB61798 ERS15394796 neurite 4 hour neuron of crebral cortex Pro_4_Rep3
PRJEB61798 ERS15394797 neurite 8 hour neuron of crebral cortex Pro_8_Rep1
PRJEB61798 ERS15394798 neurite 8 hour neuron of crebral cortex Pro_8_Rep2
PRJEB61798 ERS15394799 neurite 8 hour neuron of crebral cortex Pro_8_Rep3

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Dynamic RNA Localization

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Specific RNA Ratio

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